Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Macromolecule Metabolic Process (GO:0043170) Genes Targeted by hsa-mir-643 in CA Bladder Dyrskjot Cluster 0 Table contains all genes in the CA Bladder Dyrskjot cluster number 0. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-643 GO:0043170 6421 SFPQ splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774] zzz999 Yes 22909 FAN1 FANCD2/FANCI-associated nuclease 1 [Source:HGNC Symbol;Acc:29170] P Yes 23394 ADNP activity-dependent neuroprotector homeobox [Source:HGNC Symbol;Acc:15766] P T Yes 4714 NDUFB8 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [Source:HGNC Symbol;Acc:7703] zzz999 11215 AKAP11 A kinase (PRKA) anchor protein 11 [Source:HGNC Symbol;Acc:369] zzz999 1997 ELF1 E74-like factor 1 (ets domain transcription factor) [Source:HGNC Symbol;Acc:3316] zzz999 Yes 55809 TRERF1 transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:18273] zzz999 Yes 84942 WDR73 WD repeat domain 73 [Source:HGNC Symbol;Acc:25928] zzz999 5607 MAP2K5 mitogen-activated protein kinase kinase 5 [Source:HGNC Symbol;Acc:6845] zzz999 Yes 65125 WNK1 WNK lysine deficient protein kinase 1 [Source:HGNC Symbol;Acc:14540] zzz999 Yes 8473 OGT O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) [Source:HGNC Symbol;Acc:8127] zzz999 Yes 55917 CTTNBP2NL CTTNBP2 N-terminal like [Source:HGNC Symbol;Acc:25330] P T 55761 TTC17 tetratricopeptide repeat domain 17 [Source:HGNC Symbol;Acc:25596] zzz999 51710 ZNF44 zinc finger protein 44 [Source:HGNC Symbol;Acc:13110] zzz999 Yes 1968 EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa [Source:HGNC Symbol;Acc:3267] zzz999 Yes 8569 MKNK1 MAP kinase interacting serine/threonine kinase 1 [Source:HGNC Symbol;Acc:7110] zzz999 Yes 23376 KIAA0776 KIAA0776 [Source:HGNC Symbol;Acc:23039] zzz999 Yes 51479 ANKFY1 ankyrin repeat and FYVE domain containing 1 [Source:HGNC Symbol;Acc:20763] zzz999 80279 CDK5RAP3 CDK5 regulatory subunit associated protein 3 [Source:HGNC Symbol;Acc:18673] T Yes 5792 PTPRF protein tyrosine phosphatase, receptor type, F [Source:HGNC Symbol;Acc:9670] zzz999 Yes 55680 RUFY2 RUN and FYVE domain containing 2 [Source:HGNC Symbol;Acc:19761] T 57798 GATAD1 GATA zinc finger domain containing 1 [Source:HGNC Symbol;Acc:29941] zzz999 Yes 9878 TOX4 TOX high mobility group box family member 4 [Source:HGNC Symbol;Acc:20161] zzz999 91746 YTHDC1 YTH domain containing 1 [Source:HGNC Symbol;Acc:30626] T Yes 10927 SPIN1 spindlin 1 [Source:HGNC Symbol;Acc:11243] P T 55779 WDR52 WD repeat domain 52 [Source:HGNC Symbol;Acc:25631] zzz999 8554 PIAS1 protein inhibitor of activated STAT, 1 [Source:HGNC Symbol;Acc:2752] P T Yes 4666 NACA nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629] zzz999 Yes 84914 ZNF587 zinc finger protein 587 [Source:HGNC Symbol;Acc:30955] T Yes 8976 WASL Wiskott-Aldrich syndrome-like [Source:HGNC Symbol;Acc:12735] zzz999 Yes 8975 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) [Source:HGNC Symbol;Acc:12611] zzz999 Yes 51135 IRAK4 interleukin-1 receptor-associated kinase 4 [Source:HGNC Symbol;Acc:17967] T Yes 55607 PPP1R9A protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:HGNC Symbol;Acc:14946] zzz999 91694 LONRF1 LON peptidase N-terminal domain and ring finger 1 [Source:HGNC Symbol;Acc:26302] P T Yes 63894 VIPAR VPS33B interacting protein, apical-basolateral polarity regulator [Source:HGNC Symbol;Acc:20347] zzz999 Yes 8837 CFLAR CASP8 and FADD-like apoptosis regulator [Source:HGNC Symbol;Acc:1876] zzz999 Yes 23389 MED13L mediator complex subunit 13-like [Source:HGNC Symbol;Acc:22962] zzz999 Yes 311 ANXA11 annexin A11 [Source:HGNC Symbol;Acc:535] T 11127 KIF3A kinesin family member 3A [Source:HGNC Symbol;Acc:6319] zzz999 6498 SKIL SKI-like oncogene [Source:HGNC Symbol;Acc:10897] zzz999 Yes 10475 TRIM38 tripartite motif containing 38 [Source:HGNC Symbol;Acc:10059] zzz999 60526 C2orf43 chromosome 2 open reading frame 43 [Source:HGNC Symbol;Acc:26145] zzz999 57466 SCAF4 SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304] zzz999 9736 USP34 ubiquitin specific peptidase 34 [Source:HGNC Symbol;Acc:20066] zzz999 Yes 147179 WIPF2 WAS/WASL interacting protein family, member 2 [Source:HGNC Symbol;Acc:30923] T 25832 NBPF14 neuroblastoma breakpoint family, member 14 [Source:HGNC Symbol;Acc:25232] zzz999 29896 TRA2A transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] zzz999 Yes 8287 USP9Y ubiquitin specific peptidase 9, Y-linked [Source:HGNC Symbol;Acc:12633] T Yes 10181 RBM5 RNA binding motif protein 5 [Source:HGNC Symbol;Acc:9902] zzz999 Yes 114791 TUBGCP5 tubulin, gamma complex associated protein 5 [Source:HGNC Symbol;Acc:18600] zzz999 9725 TMEM63A transmembrane protein 63A [Source:HGNC Symbol;Acc:29118] zzz999 23192 ATG4B ATG4 autophagy related 4 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:20790] zzz999 Yes 7919 DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:HGNC Symbol;Acc:13917] zzz999 Yes 196441 ZFC3H1 zinc finger, C3H1-type containing [Source:HGNC Symbol;Acc:28328] zzz999 Yes 9295 SRSF11 serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782] T Yes

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